NeuroDevSim documentation

Contents:

• NeuroDevSim Concepts
  • Overview
  • Concepts and software design
  • Fronts
  • Agent-based modeling
  • Admin process
  • Neurons as trees
  • Growth-rate
• NeuroDevSim Installation
• Beginner’s Tutorial
  • Getting started
  • How many processors to use
  • Useful Errors
  • Important dos and don’ts
  • Additional growth methods
• Classes and Methods
  • processing module
  • simulator module
• Basic Tutorial
  • Modeling growth
  • Modeling neuron pruning
  • Environment cues
  • Preventing and dealing with collisions
  • Modeling soma migration
  • Neurons
  • Synapses
  • Substrate
  • SWC types used in NeuroDevSim
  • Plotting the simulation
  • Efficient tricks
• Advanced Tutorial
  • Subclassing Front
  • Front status flags
  • Importing a simulation
  • Interactive mode
  • Understanding the database
  • Storing additional attributes
• Examples
  • Beginner’s Examples
  • Basic Examples
  • Advanced Examples
  • Python scripts
• Changes compared previous versions
  • Version 1.0.1

Indices and tables

• Index

• Search Page